Index

_

__annotations__ (plotbee.frame.Frame attribute) __dict__ (plotbee.body.Body attribute) (plotbee.frame.Frame attribute), [1] (plotbee.video.Video attribute) __getitem__() (plotbee.frame.Frame method), [1] (plotbee.video.Video method) __init__() (plotbee.body.Body method) (plotbee.frame.Frame method), [1] (plotbee.video.Video method) __len__() (plotbee.body.Body method) (plotbee.frame.Frame method), [1] (plotbee.video.Video method)

__module__ (plotbee.body.Body attribute) (plotbee.frame.Frame attribute), [1] (plotbee.video.Video attribute) __repr__() (plotbee.body.Body method) (plotbee.frame.Frame method), [1] (plotbee.video.Video method) __weakref__ (plotbee.body.Body attribute) (plotbee.frame.Frame attribute), [1] (plotbee.video.Video attribute) _extract_bodies_images() (plotbee.frame.Frame static method), [1] _get_frame() (plotbee.video.Video method) _image() (plotbee.body.Body method) (plotbee.frame.Frame method), [1]

A

activate_buttons() (plotbee.annotate.BodyAnnotator method) ACTIVE (plotbee.annotate.BodyAnnotator attribute) angle (plotbee.body.Body property), [1] angleBetweenPoints() (in module plotbee.utils) annotate() (plotbee.body.Body method), [1]

annotate_bodies() (plotbee.annotate.BodyAnnotator method) annotate_video() (plotbee.annotate.BodyAnnotator method) annotations (plotbee.body.Body property), [1] append() (plotbee.video.Video method), [1] associate_detections_to_trackers() (in module plotbee.sort)

B

back() (plotbee.annotate.BodyAnnotator method) bbox() (in module plotbee.videoplotter) bbox_drawer() (in module plotbee.videoplotter) bbox_image() (plotbee.frame.Frame method), [1] bodies (plotbee.frame.Frame property), [1] bodies() (plotbee.tagged.TagVideoCollection method) bodies2csv() (in module plotbee.export) bodies_at_point() (plotbee.frame.Frame method), [1] bodies_bbox_drawer() (in module plotbee.videoplotter) bodies_event_track_drawer() (in module plotbee.videoplotter)

bodies_images() (plotbee.frame.Frame method), [1] bodies_skeleton_drawer() (in module plotbee.videoplotter) bodies_track_drawer() (in module plotbee.videoplotter) Body (class in plotbee.body), [1] body_annotation() (in module plotbee.export) body_cbox_overlaping_ratio() (in module plotbee.tracking) body_distance() (in module plotbee.tracking) body_info_str() (in module plotbee.annotate) BodyAnnotator (class in plotbee.annotate) bound_box_points() (in module plotbee.utils) boundingBox() (plotbee.body.Body method), [1]

C

cbox() (plotbee.body.Body method), [1] center (plotbee.body.Body property), [1] clear_annotation() (plotbee.annotate.BodyAnnotator method) clear_colors() (plotbee.annotate.BodyAnnotator method) clear_ids() (plotbee.video.Video method), [1] clear_tags() (plotbee.video.Video method), [1] clear_task_button() (plotbee.annotate.BodyAnnotator method) coco_file_init() (in module plotbee.export) collect_annotations() (plotbee.annotate.BodyAnnotator method) config (plotbee.video.Video property), [1] connections (plotbee.body.Body property), [1] contact_sheet() (in module plotbee.videoplotter)

convert_bbox_to_z() (in module plotbee.sort) convert_labelbee() (in module plotbee.export) convert_x_to_bbox() (in module plotbee.sort) cost_matrix_tracks_skeleton() (in module plotbee.tracking) cost_matrix_tracks_vectorized() (in module plotbee.tracking) count (plotbee.sort.KalmanBoxTracker attribute) count_annotated_bodies() (in module plotbee.annotate) create_bodies_from_mapping() (in module plotbee.video), [1] current_annotation (plotbee.annotate.BodyAnnotator property) current_body (plotbee.annotate.BodyAnnotator property) cX (plotbee.body.Body attribute), [1] cY (plotbee.body.Body attribute), [1]

D

DataFrame() (plotbee.tagged.TagVideoCollection method) days_histogram() (in module plotbee.tagged) deactivate_buttons() (plotbee.annotate.BodyAnnotator method) DEACTIVE (plotbee.annotate.BodyAnnotator attribute) decode_image() (in module plotbee.export) default_buttons() (plotbee.annotate.BodyAnnotator method) delete_virtual_bodies() (plotbee.frame.Frame method), [1] detect_tags() (in module plotbee.tag)

detect_tags_on_frame() (in module plotbee.tag) detect_tags_on_video() (in module plotbee.tag) detect_tags_on_video_frame_level() (in module plotbee.tag) display_body_annotations() (plotbee.annotate.BodyAnnotator method) dist() (in module plotbee.tag) (in module plotbee.video), [1] divide_video() (in module plotbee.video), [1] draw_frame_image() (plotbee.frame.Frame method), [1]

E

end (plotbee.track.Track property) event (plotbee.track.Track property) event_image (plotbee.frame.Frame property), [1] event_track_drawer() (in module plotbee.videoplotter) events() (in module plotbee.videoplotter) events_counter() (plotbee.video.Video method), [1] export() (plotbee.tagged.TagVideoCollection method) (plotbee.video.Video method), [1]

export_bodies() (plotbee.video.Video method), [1] export_pollen() (plotbee.video.Video method), [1] export_tagged() (plotbee.video.Video method), [1] extract_annotations() (in module plotbee.export) extract_body() (in module plotbee.videoplotter) extract_body_annotation() (in module plotbee.export) extract_frame_annotations() (in module plotbee.export) extract_images() (in module plotbee.export) extract_patch() (plotbee.frame.Frame method), [1]

F

filter() (plotbee.tagged.TagVideoCollection method) filter_corners() (in module plotbee.tag) find_bodyid() (in module plotbee.video), [1] find_connections() (in module plotbee.utils) (in module plotbee.video), [1] Frame (class in plotbee.frame), [1]

frame_image() (plotbee.video.Video method), [1] frameid (plotbee.body.Body property), [1] frames (plotbee.video.Video property), [1] frames_from_detections() (in module plotbee.video), [1] from_config() (plotbee.video.Video class method), [1] from_detections() (plotbee.video.Video class method), [1]

G

get_animate() (plotbee.videoplotter.VideoAnimation method) get_body() (in module plotbee.export) (plotbee.tagged.TagVideoCollection method) get_fname() (in module plotbee.utils) get_frame() (in module plotbee.export) get_frame_with_untracked_body() (plotbee.video.Video method), [1] get_full_skeleton() (in module plotbee.export) get_images() (in module plotbee.export) get_init() (plotbee.videoplotter.VideoAnimation method) get_mappings_by_limb() (in module plotbee.video), [1]

get_occurence() (plotbee.tagged.TagVideoCollection method) get_state() (plotbee.sort.KalmanBoxTracker method) get_tag_image() (in module plotbee.tag) get_track() (plotbee.frame.Frame method), [1] get_track_frame() (in module plotbee.export) get_video() (in module plotbee.video), [1] get_video_stream() (plotbee.video.Video method), [1] getRotationMatrix() (in module plotbee.utils) go_back() (plotbee.annotate.BodyAnnotator method) go_next() (plotbee.annotate.BodyAnnotator method)

H

hash1() (in module plotbee.utils) hash2() (in module plotbee.utils) hash3() (in module plotbee.utils) height (plotbee.body.Body attribute), [1]

hour_histogram() (in module plotbee.tagged) hungarian_tracking() (in module plotbee.tracking) (plotbee.video.Video method), [1] hungarian_tracking_with_prediction() (in module plotbee.tracking)

I

id (plotbee.body.Body property), [1] (plotbee.frame.Frame property), [1] id2color() (in module plotbee.utils) ignore_angle (plotbee.body.Body attribute), [1] image (plotbee.body.Body property), [1] (plotbee.frame.Frame property), [1] image_annotation() (in module plotbee.export)

image_from_video() (in module plotbee.video), [1] imshow() (in module plotbee.videoplotter) info() (plotbee.body.Body method), [1] IntegerIDGen (class in plotbee.tracking) iou() (in module plotbee.sort) isAnnotationComplete() (in module plotbee.annotate) isBodyAnnotated() (in module plotbee.annotate) isBodyCompletedAnnotated() (in module plotbee.annotate)

J

jit() (in module plotbee.sort)

json() (plotbee.tagged.TagVideoCollection method) (plotbee.video.Video method), [1]

K

KalmanBoxTracker (class in plotbee.sort)

L

linear_assignment() (in module plotbee.sort) load() (plotbee.tagged.TagVideoCollection class method) (plotbee.video.Video class method), [1] load_body() (plotbee.body.Body class method), [1]

load_image() (in module plotbee.annotate) load_json_model() (in module plotbee.video), [1] load_pollen_model() (in module plotbee.video), [1] load_tags() (plotbee.video.Video method), [1] load_video() (plotbee.video.Video method), [1]

M

match_tag2body() (in module plotbee.tag) match_tags() (in module plotbee.video), [1] matchIds() (in module plotbee.tracking) merge_videos() (in module plotbee.video), [1] metadata (plotbee.body.Body property), [1] module plotbee plotbee.annotate plotbee.body, [1] plotbee.events plotbee.export plotbee.frame, [1] plotbee.pollen plotbee.sort plotbee.tag plotbee.tagged plotbee.track plotbee.tracking plotbee.utils plotbee.video, [1] plotbee.video_wrapper plotbee.videoplotter setup

MultiLabelButton (class in plotbee.annotate)

N

next (plotbee.body.Body property), [1] next_body_batch() (plotbee.annotate.BodyAnnotator method) nms_euclid() (in module plotbee.tracking)

non_max_supression() (in module plotbee.tracking) (plotbee.video.Video method), [1] non_max_supression_video() (in module plotbee.tracking)

O

out_height (plotbee.body.Body attribute), [1]

out_width (plotbee.body.Body attribute), [1]

P

params() (plotbee.body.Body method), [1] (plotbee.track.Track method) parse_args() (in module plotbee.sort) parse_body_entry() (in module plotbee.export) parse_name() (in module plotbee.tagged) parse_parts() (in module plotbee.body), [1] parse_skeleton() (in module plotbee.export) parse_skeletons() (in module plotbee.export) parse_track_entry() (in module plotbee.export) parse_videos() (in module plotbee.export) parts (plotbee.body.Body property), [1] parts() (in module plotbee.videoplotter) parts_annotations() (in module plotbee.export) parts_drawer() (in module plotbee.videoplotter) parts_image (plotbee.frame.Frame property), [1] plot() (in module plotbee.videoplotter) plot_action_buttons() (plotbee.annotate.BodyAnnotator method) plot_bounding_box() (in module plotbee.utils) plot_options_buttons() (plotbee.annotate.BodyAnnotator method) plot_textareas() (plotbee.annotate.BodyAnnotator method) plotbee module plotbee.annotate module plotbee.body module, [1] plotbee.events module plotbee.export module plotbee.frame module, [1] plotbee.pollen module

plotbee.sort module plotbee.tag module plotbee.tagged module plotbee.track module plotbee.tracking module plotbee.utils module plotbee.video module, [1] plotbee.video_wrapper module plotbee.videoplotter module point_in_frame() (in module plotbee.video), [1] pointInRotatedBbox() (in module plotbee.utils) pollen (plotbee.body.Body property), [1] (plotbee.track.Track property) pollen_threshold (plotbee.body.Body attribute), [1] predict() (plotbee.sort.KalmanBoxTracker method) preload_bodies() (in module plotbee.annotate) (plotbee.annotate.BodyAnnotator method) preprocess_input() (in module plotbee.video), [1] prev (plotbee.body.Body property), [1] prev_body_batch() (plotbee.annotate.BodyAnnotator method) process_frame() (in module plotbee.video), [1] process_frame_consumer() (in module plotbee.video), [1] process_pollen() (in module plotbee.video), [1] (plotbee.video.Video method), [1] process_video() (in module plotbee.video), [1]

R

read() (plotbee.video_wrapper.VideoCaptureWrapper method) read_json() (in module plotbee.utils) record() (plotbee.annotate.BodyAnnotator method) record_annotation() (in module plotbee.annotate) release() (plotbee.video_wrapper.VideoCaptureWrapper method)

requires_apriltag() (in module plotbee.tag) rescale_image() (in module plotbee.utils) rotate_around_point() (in module plotbee.utils) rotate_bound2() (in module plotbee.utils) rotatedBoundBoxPoints() (in module plotbee.utils)

S

save() (plotbee.annotate.BodyAnnotator method) (plotbee.body.Body method), [1] (plotbee.frame.Frame method), [1] (plotbee.tagged.TagVideoCollection method) (plotbee.video.Video method), [1] (plotbee.videoplotter.VideoAnimation method) save_json() (in module plotbee.utils) scale (plotbee.body.Body attribute), [1] select() (plotbee.tagged.TagVideoCollection method) set_id() (plotbee.body.Body method), [1] set_metadata() (plotbee.body.Body method), [1] set_status_text() (plotbee.annotate.BodyAnnotator method) set_video() (plotbee.frame.Frame method), [1] setup module show() (plotbee.annotate.BodyAnnotator method) (plotbee.videoplotter.VideoAnimation method)

show_body() (in module plotbee.annotate) show_next() (plotbee.annotate.BodyAnnotator method) skeleton (plotbee.body.Body property), [1] skeleton() (in module plotbee.videoplotter) skeleton_drawer() (in module plotbee.videoplotter) skeleton_image (plotbee.body.Body property), [1] (plotbee.frame.Frame property), [1] skip() (plotbee.annotate.BodyAnnotator method) sleap2pb() (in module plotbee.export) Sort (class in plotbee.sort) sort_tracking() (in module plotbee.tracking) (plotbee.video.Video method), [1] split_options() (plotbee.annotate.BodyAnnotator method) start (plotbee.track.Track property) suppressed (plotbee.body.Body attribute), [1]

T

tag (plotbee.track.Track property) tag_detection() (plotbee.video.Video method), [1] tag_erased_image() (plotbee.body.Body method), [1] tag_id (plotbee.body.Body property), [1] (plotbee.track.Track property) tag_image() (plotbee.body.Body method), [1] tag_images() (in module plotbee.videoplotter) tagDetector() (in module plotbee.tag) tagged() (plotbee.video.Video method), [1] tagged_contact_sheet() (in module plotbee.videoplotter) TagVideoCollection (class in plotbee.tagged) tfv2_pollen_classifier() (in module plotbee.video), [1]

Track (class in plotbee.track) track_clasification() (plotbee.video.Video method), [1] track_classification() (in module plotbee.events) TRACK_DIRECTION (plotbee.frame.Frame attribute), [1] track_drawer() (in module plotbee.videoplotter) track_image() (plotbee.frame.Frame method), [1] track_images() (in module plotbee.videoplotter) track_shape (plotbee.track.Track property) trackevent2color() (in module plotbee.utils) tracks (plotbee.video.Video property), [1] tracks() (in module plotbee.videoplotter) tracks2csv() (in module plotbee.export)

U

update() (plotbee.annotate.BodyAnnotator method) (plotbee.frame.Frame method), [1] (plotbee.sort.KalmanBoxTracker method) (plotbee.sort.Sort method)

V

valid (plotbee.body.Body property), [1] valid_bodies (plotbee.frame.Frame property), [1] valid_fn() (in module plotbee.body), [1] valid_function() (plotbee.body.Body method), [1] Video (class in plotbee.video), [1] video2analysis() (in module plotbee.export) video2coco() (in module plotbee.export)

video2labelbee() (in module plotbee.export) video_name (plotbee.body.Body property), [1] (plotbee.frame.Frame property), [1] (plotbee.video.Video property), [1] video_path (plotbee.video.Video property), [1] VideoAnimation (class in plotbee.videoplotter) VideoCaptureWrapper (class in plotbee.video_wrapper)

W

width (plotbee.body.Body attribute), [1]

Y

y_offset (plotbee.body.Body attribute), [1]